rs46892090 SNP Detail

Summary

• ID
  rs46892090
• Variation Type
  SNP
• Alleles
  T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr7:59651386 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        TTAACATAAA GTTCTGTGAA CAAAACAAGT AAAATAACAC
  TTTTAATAAC AATAAAGTTC CCTTAATTAA GATTTGTTCA TCTAAATTGA AGAAAAGACA
  T
  CCAGAATTTT CCAACTCAGT ATCTGGTGCA GCAATAATCA CAATAGTCAA CTGTCTCTTG
  AGACTGCATT TTGAGTTACA GTTAGACCCT TCCTTAAAA                       
  
  T = T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	DBA/2J
ss144685469	ENSMUSSNP1918857	ENSEMBL	ENSEMBL_Sanger	f	SNP	T
SNP Consensus Information
SNP					Consensus Type	DBA/2J
rs46892090					SNP	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:59651386 () rs orientation: forward

Symbol	Name	Function Class
Del(7Ube3a-Snrpn)1Alb	Deletion, Chr 7, Beaudet 1	within coordinates
Gm38393	predicted gene, 38393	Intron
Rr647544	regulatory region 647544	1536 bp proximal
Snrpn	small nuclear ribonucleoprotein N	Intron
Snurf	SNRPN upstream reading frame	Intron
Tssr72702	transcription start site region 72702	1345 bp downstream
Tssr72703	transcription start site region 72703	1423 bp downstream
Tssr72704	transcription start site region 72704	1500 bp downstream
Tssr72705	transcription start site region 72705	1526 bp downstream