rs46892673 SNP Detail

Summary

• ID
  rs46892673
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:105513150 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        GAGGGTAAAA TCATAGACGC GCTCCTTCCC TCTCGCCCTA
  GTCTCTACGA CAAGACAATG GGATGAGGTT GTGAGACAAG AGTGGAAGGA AGGACCGGTG
  R
  CACTGTGATG TGGTCTTTTT CTTTTTCTGG TTTGGGTTTC TGTTAATATT TGTGTCCTTG
  GCTGAGGGGG AGGGCGGAGT TCAGCAGCGG AAGTAAAGC                       
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
ss147168862	ENSMUSSNP1187338	ENSEMBL	ENSEMBL_Sanger	f	SNP	G	A	A
ss320448074	CHEV_2_105522962	CHEVERUD	SCREENING_POP	f	SNP				G	A
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
rs46892673					SNP	G	A	A	G	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:105513150 () rs orientation: forward

Symbol	Name	Function Class
Cpgi12021	CpG island 12021	1117 bp distal
Cpgi12022	CpG island 12022	389 bp distal
Pax6	paired box 6	within coordinates
Rr55347	regulatory region 55347	within coordinates
Rr366621	regulatory region 366621	within coordinates
Tssr588	transcription start site region 588	761 bp upstream
Tssr19262	transcription start site region 19262	600 bp downstream
Tssr19263	transcription start site region 19263	314 bp downstream
Tssr19264	transcription start site region 19264	275 bp downstream
Tssr19265	transcription start site region 19265	118 bp downstream
Tssr19266	transcription start site region 19266	60 bp downstream
Tssr19267	transcription start site region 19267	163 bp upstream
Tssr19268	transcription start site region 19268	209 bp upstream