rs46894114 SNP Detail

Summary

• ID
  rs46894114
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr17:18090731 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        TAAGGTAGCT TGGGGGTAGA ACTTCTGCCT AGAATCCACA
  GTGAGGGTCT GGGGATCTGG TTCATTCTAA GAAGTAGGGC ATTTGTTCAT CATGTATATG
  R
  GCTTGGTTTC TGTTCTCTAT ATTGTCACCA CCGCAAAACA ATAAGGAGAA AACTGATACA
  AAATACCACA ACTAAATACC GTAAATACCA AAAACTAAA                       
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	DBA/2J	LG/J	SM/J
ss145227466	ENSMUSSNP6994601	ENSEMBL	ENSEMBL_Sanger	f	SNP	A	A
ss325312328	CHEV_17_18007433	CHEVERUD	SCREENING_POP	f	SNP			A	G
SNP Consensus Information
SNP					Consensus Type	A/J	DBA/2J	LG/J	SM/J
rs46894114					SNP	A	A	A	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr17:18090731 () rs orientation: forward

Symbol	Name	Function Class
Gm36907	predicted gene, 36907	within coordinates
Rr340653	regulatory region 340653	670 bp proximal
Tssr5021	transcription start site region 5021	672 bp upstream
Tssr5022	transcription start site region 5022	696 bp upstream
Tssr5023	transcription start site region 5023	1225 bp downstream
Tssr142818	transcription start site region 142818	1494 bp upstream