rs46895414 SNP Detail

Summary

• ID
  rs46895414
• Variation Type
  SNP
• Alleles
  T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr14:54411874 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        CTAATGGAGT GACTGGTGAT GATTAGCATG ATGTGATGAA
  GATGAGGGCT TTGAGTGTTT TTGGTTTGTT TTTTTTTTTT TTTAACCCAT GATTAAGAAG
  T
  AAATAGTAGA ATTTTTGGAG CAAGCCACCA GGCAGTAGTC CCTGAAGACA GCCGAAGTAC
  CTGGGCATGA TCTCTTTCTG GGTTGCTTTT TGTAGTGTT                       
  
  T = T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J
ss139557158	ENSMUSSNP3835031	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	T	T
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J
rs46895414					SNP	T	T	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr14:54411874 () rs orientation: forward

Symbol	Name	Function Class
A430107P09Rik	RIKEN cDNA A430107P09 gene	within coordinates
Rr492147	regulatory region 492147	806 bp distal
Rr492148	regulatory region 492148	1937 bp proximal
Tcra	T cell receptor alpha chain	within coordinates
Traj41	T cell receptor alpha joining 41	1854 bp upstream
Traj42	T cell receptor alpha joining 42	1356 bp upstream
Traj43	T cell receptor alpha joining 43	325 bp upstream
Traj44	T cell receptor alpha joining 44	667 bp downstream
Traj45	T cell receptor alpha joining 45	1527 bp downstream
Tssr125558	transcription start site region 125558	883 bp downstream
Tssr125559	transcription start site region 125559	863 bp downstream
Tssr125560	transcription start site region 125560	827 bp downstream
Tssr125561	transcription start site region 125561	813 bp downstream
Tssr125562	transcription start site region 125562	16 bp downstream
Tssr125563	transcription start site region 125563	183 bp upstream
Tssr125564	transcription start site region 125564	448 bp upstream
Tssr125565	transcription start site region 125565	537 bp upstream
Tssr125566	transcription start site region 125566	1557 bp upstream
Tssr125567	transcription start site region 125567	1791 bp upstream
Tssr125568	transcription start site region 125568	1810 bp upstream
Tssr125569	transcription start site region 125569	1836 bp upstream
Tssr125570	transcription start site region 125570	1854 bp upstream