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rs46895953 SNP Detail
Summary
  • ID
    rs46895953
  • Variation Type
    SNP
  • Alleles
    C/T
Genome Location and Flanking Sequence
  • Location
    Chr1:164380807 (GRCm39)
  • SNP Orientation to the Genome
    forward
  • SNP Reference Flanking Sequence
                          TCTGGATGCT TTGGATCTGA GCATTTGGGT GTAGAGAGCA
    CAGGAATCTT TTTCATTTGT AACCAGCATT CCCTGTGGTT TCACTCTGCT GATAATGGTG
    Y
    TTCCTTTACT GGCATTTGGG AGCTCTTTCT CACCCTCCAT TAACAGCCAC CTCCATCCCT
    TTTTTTCCTT TCTTCAGTAC CAGATATTGA ACCCAGGAC                       
    
    Y = C/T
    

    Note: Sequence in lower case indicates low-complexity or repetitive sequence
    BLAST SNP flanking sequence against the mouse Genome
SNP Assays
and
SNP Consensus
Strain alleles of submitted assays, and consensus values for this SNP
Legend
Assay ID Submitter
SNP ID
Submitter
Handle
Population
ss orientation
Variation Type
129S1/SvImJ
A/J
AKR/J
BALB/cByJ
BTBR T<+> Itpr3/J
C3H/HeJ
CAST/EiJ
DBA/2J
FVB/NJ
KK/HlJ
MOLF/EiJ
NOD/ShiLtJ
NZW/LacJ
PWD/PhJ
WSB/EiJ
ss60336983 NES15838334 PERLEGEN MM_PANEL2 f SNP C C C C C C C T C C T C C T C
ss145981114 ENSMUSSNP3641919 ENSEMBL ENSEMBL_Sanger f SNP C T
SNP Consensus Information
SNP Consensus Type
129S1/SvImJ
A/J
AKR/J
BALB/cByJ
BTBR T<+> Itpr3/J
C3H/HeJ
CAST/EiJ
DBA/2J
FVB/NJ
KK/HlJ
MOLF/EiJ
NOD/ShiLtJ
NZW/LacJ
PWD/PhJ
WSB/EiJ
rs46895953 SNP C C C C C C C T C C T C C T C
Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter
Assay ID Submitter
SNP ID
Submitter
Handle
Population
ss orientation
Variation
Type
Alleles
ss60336983 NES15838334 PERLEGEN MM_PANEL f SNP C/T
Gene/Marker
Associations
and
Function
Classes
MGI genes/markers associated with the SNP
Location: Chr1:164380807 () rs orientation: forward
Symbol Name Transcript Protein Function
Class
Allele Residue Codon
Position
AA
Position
Gm70527 predicted gene, 70527 828 bp downstream
Rr372378 regulatory region 372378 within coordinates
Rr422240 regulatory region 422240 1954 bp distal
Rr422241 regulatory region 422241 121 bp distal

Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
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Funding Information
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last database update
12/17/2024
MGI 6.24
The Jackson Laboratory