rs46896019 SNP Detail

Summary

• ID
  rs46896019
• Variation Type
  SNP
• Alleles
  C

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr17:24914720 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        GTTTA GGCATAGCCA ACCCTGAGGG
  C
  TTGGGCCGTG CGGTAGCCGA ACGGG                                      
  
  C = C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	DBA/2J	LG/J	SM/J
ss145361475	ENSMUSSNP6631994	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	C
ss325333069	CHEV_17_24832691	CHEVERUD	SCREENING_POP	f	SNP			C	C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	DBA/2J	LG/J	SM/J
rs46896019					SNP	C	C	C	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr17:24914720 () rs orientation: forward

Symbol	Name	Function Class
Cpgi8739	CpG island 8739	within coordinates
Gfer	growth factor, augmenter of liver regeneration	within coordinates
Noxo1	NADPH oxidase organizer 1	488 bp upstream
Rr523392	regulatory region 523392	within coordinates
Rr523393	regulatory region 523393	312 bp proximal
Rr523394	regulatory region 523394	773 bp proximal
Tssr5034	transcription start site region 5034	810 bp downstream
Tssr143060	transcription start site region 143060	530 bp upstream
Tssr143061	transcription start site region 143061	914 bp upstream
Tssr146764	transcription start site region 146764	241 bp downstream
Tssr146765	transcription start site region 146765	319 bp downstream
Tssr146766	transcription start site region 146766	375 bp downstream
Tssr146767	transcription start site region 146767	401 bp downstream
Tssr146768	transcription start site region 146768	451 bp downstream
Tssr146769	transcription start site region 146769	759 bp downstream
Tssr146770	transcription start site region 146770	795 bp downstream
Tssr146771	transcription start site region 146771	823 bp downstream