rs46898020 SNP Detail

Summary

• ID
  rs46898020
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr13:15669446 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CCCACAGAGA ACCTTGAACT
  TCCTTCTTTC CCCGTAGGAG TGTCTCTGGG AAATCACACA TACAATAGAA CTTTTCATGT
  CTAGACCCTG CCCAGGGGAT TTCTGTCTAA TAAGAAAGTT TTTTTCTCTC TCTCTCTTTT
  TTTTTTCTTC TTTAGCATAC TCAGAACAGA ACAAAGGAAG AGGTTGTGGA CAGAGTGCGG
  K
  AAAGAAAATG TAGCAAACAC TGGGTCATGT ATCTTACTAA CAGCTTCATT CTGACATATA
  GGCAATCTTG TAAGCACAGG GCTCAGTTTT GCTGATGTGC TACCATAGCT AACAAACTCT
  ATAAGGCCGT GCTAAATGTT ACACACATAC TTGACTTGGA TGAGTTAATA GCCAGATCAC
  AGGATACTCA CTTAAGAAGT                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss61752971	NES17684159	PERLEGEN	MM_PANEL2	f	SNP	T	G	G	G	G	G	G	G	G	G	G	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs46898020					SNP	T	G	G	G	G	G	G	G	G	G	G	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss61752971	NES17684159	PERLEGEN	MM_PANEL	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr13:15669446 () rs orientation: forward

Symbol	Name	Function Class
Gli3	GLI-Kruppel family member GLI3	within coordinates
Rr2092	regulatory region 2092	1962 bp distal
Rr2093	regulatory region 2093	within coordinates
Rr2094	regulatory region 2094	1734 bp proximal