rs46898023 SNP Detail

Summary

• ID
  rs46898023
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:153856084 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        CAGGAAACTA GGATTCGGGC CTCCCCAAAG GCTTCAGCCT
  GCTGAGGATC TTAAAGTTCT GGGGTTCAAG AGTTCAAGGT TTTTAGGAGC GTGGGGTATT
  R
  GGGTTCTGGA TGCTAGATTG TCGGATTCTG AACTTCTGAT ATCCTGAGAT GGCAGGTTCT
  TAGTAGCCTG GGACAGTTCG GATTCAGGTT GCCGCAATT                       
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
ss148015870	ENSMUSSNP6825891	ENSEMBL	ENSEMBL_Sanger	f	SNP	A	G	G
ss320567632	CHEV_2_153839900	CHEVERUD	SCREENING_POP	f	SNP				G	A
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
rs46898023					SNP	A	G	G	G	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:153856084 () rs orientation: forward

Symbol	Name	Function Class
Bpifa2	BPI fold containing family A, member 2	within coordinates
D2Mit511	DNA Segment, Chr 2, Massachusetts Institute of Technology-511	1626 bp distal
Tssr20962	transcription start site region 20962	477 bp downstream
Tssr20963	transcription start site region 20963	435 bp downstream
Tssr20964	transcription start site region 20964	749 bp upstream
Tssr20965	transcription start site region 20965	769 bp upstream
Tssr20966	transcription start site region 20966	1783 bp upstream
Tssr26920	transcription start site region 26920	1801 bp downstream
Tssr26921	transcription start site region 26921	1822 bp downstream