rs46898596 SNP Detail

Summary

• ID
  rs46898596
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr12:113394250 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTTCCTCAGA TTTCTCAAGC
  CTCTCTACTT CCTCATAGCT CAGGCTGCCC CTGGAGAGCT CCAAACAGAA GGTTTTTGTT
  GAGCCACGTG TCACCGTGGT CCCAGTTAGC ACTGTGGTGC TCCGCTTAGT CAAAACCTTG
  CACCAGTCAG AGACCACAGG GACTCTGAGG CTTAAACCTC ACACTAGCCA CAGAGTATGG
  R
  TATTCTGATC CCCAATCTGC CAGTCATCTC TTGAGTCAGG GACCAATGAT TTCTCTCAAA
  ACAGTCGCTA AAGTTCTCGA GCCTGTGGGG TTTGTCTTCT TTTTAAAATA AGAGCAGATG
  GAGGTCCATC TGTCATTCAC TTGTGTCTGA GTTATCAACT ATGGAGAAAG GTCTGTGATG
  GTGGGGGTGG GGCAGTGCCC                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	DBA/2J
ss138742439	ENSMUSSNP1457845	ENSEMBL	ENSEMBL_Sanger	f	SNP	A	G
SNP Consensus Information
SNP					Consensus Type	A/J	DBA/2J
rs46898596					SNP	A	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr12:113394250 () rs orientation: forward

Symbol	Name	Function Class
Igh	immunoglobulin heavy chain complex	within coordinates
Ighd4-1	immunoglobulin heavy diversity 4-1	92 bp upstream
Ighg	Immunoglobulin heavy chain (gamma polypeptide)	within coordinates
Ighj1	immunoglobulin heavy joining 1	797 bp upstream
Ighj2	immunoglobulin heavy joining 2	1115 bp upstream
Ighj3	immunoglobulin heavy joining 3	1498 bp upstream
Tssr115504	transcription start site region 115504	390 bp downstream
Tssr118008	transcription start site region 118008	1979 bp upstream
Tssr118009	transcription start site region 118009	1968 bp upstream
Tssr118010	transcription start site region 118010	1830 bp upstream
Tssr118011	transcription start site region 118011	1732 bp upstream
Tssr118012	transcription start site region 118012	1497 bp upstream
Tssr118013	transcription start site region 118013	1482 bp upstream
Tssr118014	transcription start site region 118014	1378 bp upstream
Tssr118015	transcription start site region 118015	1282 bp upstream
Tssr118016	transcription start site region 118016	1128 bp upstream
Tssr118017	transcription start site region 118017	788 bp upstream
Tssr118018	transcription start site region 118018	245 bp upstream
Tssr118019	transcription start site region 118019	189 bp upstream
Tssr118020	transcription start site region 118020	144 bp upstream
Tssr118021	transcription start site region 118021	27 bp upstream
Tssr118022	transcription start site region 118022	within coordinates
Tssr118023	transcription start site region 118023	156 bp downstream