rs46899018 SNP Detail

Summary

• ID
  rs46899018
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr14:14372116 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        CTGTC TTAAAGCTTA TTGTTTAAAG
  R
  TTAGGAACTA AACCCCGTGG GATCC                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J
ss138986203	ENSMUSSNP2726964	ENSEMBL	ENSEMBL_Sanger	f	SNP	G	A
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J
rs46899018					SNP	G	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr14:14372116 () rs orientation: forward

Symbol	Name	Function Class
Cpgi6156	CpG island 6156	227 bp distal
Pxk	PX domain containing serine/threonine kinase	554 bp upstream
Rr487874	regulatory region 487874	1745 bp distal
Rr487875	regulatory region 487875	148 bp distal
Rr487876	regulatory region 487876	1376 bp proximal
Rr487877	regulatory region 487877	1819 bp proximal
Tssr4245	transcription start site region 4245	1942 bp downstream
Tssr124234	transcription start site region 124234	1840 bp downstream
Tssr124235	transcription start site region 124235	539 bp upstream