rs46900328 SNP Detail

Summary

• ID
  rs46900328
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:18474257 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GTTTGCAGCA AAATTGGTGA
  AACTGACAAT ATGTACATTA ACTGAAATAA GCCAAGCAGA AAGGCAAATG GCAGATGGTC
  TTCTTCATAT ACAGAAAGGG GGAAAATACA CTGGAAAGCA TGTTTTACCA CTCCAATTGT
  TGGCATGAAC CTAGGAGAAT ATGACCTAAA AATGAGGTGA ATTAAAGTCT CATGGAATAG
  Y
  CCACTTTATT CAGAGCATCA GGCAAGTTAT ACTCTGAGAG TTAAAAAGAG TCACCTGAGT
  AAAGTGTCTA ATCACAAGGA CAAGCCACAC ACCTTTAAAA GATGTTTTCC AGAAGCATTT
  GAACAACTGA AGTAAACCCA CTCCTATCTG CTATACCTGG GAGTATCACA AAACACATTC
  CAAGAGCAAG TCTGTGTTTT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	CAST/EiJ	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss60375957	NES15879781	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	T	T	T	T	C	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	CAST/EiJ	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs46900328					SNP	T	T	T	T	T	T	T	T	T	T	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60375957	NES15879781	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:18474257 () rs orientation: forward

Symbol	Name	Function Class
Gm30667	predicted gene, 30667	within coordinates
Gm65503	predicted gene, 65503	within coordinates
Rr573897	regulatory region 573897	1869 bp proximal