rs46900436 SNP Detail

Summary

• ID
  rs46900436
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  ChrX:111861748 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTGTCAATGA GTTGGCAAAA
  AGTCAGTTGG GAGTTAATGT AGTGCTTTGC AGTGGAGTTG AGTTGACTTC CTTCATGAGT
  TCACACAGTT CAGTGCAGGT AGGAAACAGT TGAAGCCAAA GACTAAAAAG CCAGAAGATT
  AGGACAAATT GACATTTGAG GCCAAGCAGA GCAATTCAGT GGAAAGCTGA GAGAAGCCAG
  R
  TTGAATGAAT TAGCTTGGAG AGGAGTTTGA GCCAGAACAG CTGAGTTGAA CCAGCTAGTC
  CCAGTTCAGA AAGAAATATA AAGAGTAAGC CTATTCAGCA GTAAGCCTTG GAGACAGCAA
  TTACATCAGG CAACAGTAAC ATCAGGCAAA CAAAAGTTAA ATTTACAGGT TCCCTGGGGT
  TAATAGCTAC CTGTCAATGC                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
ss134277806	ENSMUSSNP2694459	ENSEMBL	ENSEMBL_Sanger	f	SNP	G	G	A
ss325913373	CHEV_X_110065660	CHEVERUD	SCREENING_POP	f	SNP				G	A
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
rs46900436					SNP	G	G	A	G	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: ChrX:111861748 () rs orientation: forward

Symbol	Name	Function Class
Rr2637	regulatory region 2637	1748 bp distal
Rr6449	regulatory region 6449	1996 bp distal