rs46901711 SNP Detail

Summary

• ID
  rs46901711
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:37087433 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GAGGGAAGGA GGGAGGGAGA
  GAAGGGGGAA GGATAGAGGG AGTGAGAGAG GAAGGGAAGG AGACAGGGAG ACAGAGAAAC
  AGAAAAACAG AGACTGAGGC TGGGTCTTGG CTAGGTGCCC CTGGCTAGTT TGAGTACAGT
  AGCCAGGATA AGAACTGTGA ACTTTCTGAT TCCAGATTCT GGGCTCCTAC CCACTTGGAA
  R
  TGATGCCTTT TGAGGGACTG GTGAAGAAGC AGATGGCTTT TTATAGCTCC TCAGGAAGTA
  GATTAGAGAG GCCTGTCACG AGGTCCTTGG AGAATAAAGG AAATCAAGGA GGCCAGCCAA
  GCAGACTCTG TGGCCAAGTA TTTATCATCC TGCATCACTT AGCTCTTACA CATTCACTCA
  TTCATCAGAT GCTTATTCTG                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	BTBR T<+> Itpr3/J	CAST/EiJ	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
ss61379709	NES16766885	PERLEGEN	MM_PANEL2	f	SNP	A	G	G	G	A	G	G
SNP Consensus Information
SNP					Consensus Type	BTBR T<+> Itpr3/J	CAST/EiJ	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
rs46901711					SNP	A	G	G	G	A	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss61379709	NES16766885	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:37087433 () rs orientation: forward

Symbol	Name	Function Class
Gm67648	predicted gene, 67648	within coordinates
Rr401317	regulatory region 401317	950 bp upstream
Rr676635	regulatory region 676635	within coordinates
Rr676636	regulatory region 676636	840 bp proximal
Rr676637	regulatory region 676637	1122 bp proximal
Rr676638	regulatory region 676638	1267 bp proximal