rs46901861 SNP Detail

Summary

• ID
  rs46901861
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr10:115668945 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        TCAAGGCTGG AAACAGGACT CAGGAGGTGC CAACATTTCA
  ATAAAATGTG AGCTGCGCCG GGGCAGAGAC TATTTTTTTT TTTTTTTTTT TTTTTTTTTT
  W
  ACTGGTTTAG GTCACAAAAG TTTCTCAGGG TCTCAGACCA GGGCCTGACA CCCAGTGGGG
  ACTCAAGGGG TATTTGGAAA ATGAGTAAAA TAAACATCA                       
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J
ss147580998	ENSMUSSNP1612792	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	A	A
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J
rs46901861					SNP	T	A	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr10:115668945 () rs orientation: forward

Symbol	Name	Function Class
Rr385334	regulatory region 385334	220 bp upstream
Rr439263	regulatory region 439263	766 bp proximal
Tspan8	tetraspanin 8	Intron
Tssr95839	transcription start site region 95839	within coordinates