rs46904059 SNP Detail

Summary

• ID
  rs46904059
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  132
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  ChrX:13328304 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                      C TGGGGACTCG TGGCCAGCTG CCCCTCTACG ACCGACCGCC
  AAGGCACGCT TTGTGCGCAG GACCCGGAAT CCGGTACGAG CCTGCATCCC GACTTTGTCT
  R
  GGCCTGTCCT TGGGGTGACG TCATTCTGAG AGTCAGCAGA ATAAGTAGCG TCCCCTGCTG
  CAGTCCAGAG CTAAGGCTGT GAATTCAGGT CGATTCCCCC A                    
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	DBA/2J	MSM/Ms
ss134090785	ENSMUSSNP5091444	ENSEMBL	ENSEMBL_Sanger	f	SNP	G	G	A
SNP Consensus Information
SNP					Consensus Type	A/J	DBA/2J	MSM/Ms
rs46904059					SNP	G	G	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: ChrX:13328304 () rs orientation: forward

Symbol	Name	Function Class
Cpgi22634	CpG island 22634	within coordinates
Rr394757	regulatory region 394757	within coordinates
Rr690232	regulatory region 690232	within coordinates
Rr690233	regulatory region 690233	332 bp distal
Rr690234	regulatory region 690234	45 bp proximal
Rr690235	regulatory region 690235	955 bp proximal