rs46904088 SNP Detail

Summary

• ID
  rs46904088
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:54946671 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AACTGCAGCT CTCAGAGAAA
  CAGAGCTCGA GCTGACTCCA TGGTTTAAGA TCTGTCAGAA CAGCTTATAT GGAGATGGAG
  GGACAGAGTG TGGAAGCCTT GAGCAACAAT ATTTCTGGTC ATCACGTGAC CCCTCACAGA
  TGACATTTTG GAGTCAGATG GCACTGCTAA ACTTGGTCAC TGGAAAAGTA AAAGCCACCT
  M
  GGGAGACCAT GATCACTTCA TAGATAAACC CAGTTACCCA CTCGGGTCAA CCACTAGTCA
  GCATGAACAT CTCACAAATT CATGCCACTT CACGAGATGG CCACATGCTT TCCCTGCCAC
  GGTGCACCAT AGCCCCTCAG ACCACACTCA AACATGTTAA AAGTCAGAAA CCCTCCCATG
  CCAGACTCCA AATCCTACTC                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	WSB/EiJ
ss60735301	NES16377550	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	A	C	A	A	A	C	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	WSB/EiJ
rs46904088					SNP	A	A	A	A	A	A	C	A	A	A	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60735301	NES16377550	PERLEGEN	MM_PANEL	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:54946671 () rs orientation: forward

Symbol	Name	Function Class
Ankrd44	ankyrin repeat domain 44	within coordinates
Rr1418	regulatory region 1418	within coordinates
Rr411098	regulatory region 411098	1554 bp distal
Rr411099	regulatory region 411099	within coordinates
Rr411100	regulatory region 411100	1439 bp proximal
Tssr11696	transcription start site region 11696	337 bp upstream