rs46904299 SNP Detail

Summary

• ID
  rs46904299
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr7:36393631 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        TGTTG CTTTTTAAAA AGATAACCGC
  K
  TCTCTGTGAA GAGTAGAGGG AACGA                                      
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	DBA/2J	LG/J	SM/J
ss148848903	ENSMUSSNP2011993	ENSEMBL	ENSEMBL_Sanger	f	SNP	G
ss322166713	CHEV_7_37479225	CHEVERUD	SCREENING_POP	f	SNP		T	G
SNP Consensus Information
SNP					Consensus Type	DBA/2J	LG/J	SM/J
rs46904299					SNP	G	T	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:36393631 () rs orientation: forward

Symbol	Name	Function Class
Cpgi18883	CpG island 18883	92 bp proximal
Cpgi18884	CpG island 18884	971 bp proximal
Gm36722	predicted gene, 36722	within coordinates
Gm38285	predicted gene, 38285	1232 bp upstream
Rr645552	regulatory region 645552	1354 bp distal
Rr645553	regulatory region 645553	244 bp distal
Rr645554	regulatory region 645554	within coordinates
Rr645555	regulatory region 645555	1706 bp proximal
Tssr72063	transcription start site region 72063	1864 bp downstream