rs46906469 SNP Detail

Summary

• ID
  rs46906469
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr7:19433291 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CCTTCACAGC AGGGCAGAGG
  AAAGAGGTGG AGTTTGGATG CCTTGTGACC CCCCGCTCCC CTCCCCCGCC AACAAAGGGA
  GCGGACACCT CATTGAATAA TCCAGGCCTT GGTACTGGGG CACTGAGAAC CGCTCCTTCC
  CTTTCCCCGC GGGGTCTGGT GCATTGTAAA GAAAAGAGCT GGCAGCCTAA ATGGAAATGG
  K
  TGGGTGGGGG CTAAGAGGCT CAGCTTCTGG GGTGAAGATC GTTGTTCTGG GATCCCTCGT
  TGTTGATTCC TCCACCACAG GTGAACTCTT TCCATTCCAA GGCTGGGACG TGCTCCAGTT
  CCTTCAGGAG CTGTTCAGTG GTGGCTCCCG ATGGGTTTGA AGCCATACAT TAAGCCAAGC
  CCTGGGAAAC CAAGCGTTGA                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J
ss148481729	ENSMUSSNP4727857	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	G
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J
rs46906469					SNP	T	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:19433291 () rs orientation: forward

Symbol	Name	Function Class
Apoe	apolipoprotein E	mRNA-UTR
Cpgi18508	CpG island 18508	565 bp distal
D7Mit57	DNA segment, Chr 7, Massachusetts Institute of Technology 57	1447 bp distal
Gm71725	predicted gene, 71725	within coordinates
Rr643242	regulatory region 643242	469 bp distal
Rr643243	regulatory region 643243	1070 bp distal
Rr643244	regulatory region 643244	within coordinates
Rr643245	regulatory region 643245	964 bp proximal
Rr643246	regulatory region 643246	1890 bp proximal
Tomm40	translocase of outer mitochondrial membrane 40	1947 bp downstream
Tssr2122	transcription start site region 2122	1701 bp upstream
Tssr64894	transcription start site region 64894	1868 bp downstream
Tssr64895	transcription start site region 64895	1789 bp downstream
Tssr64896	transcription start site region 64896	1765 bp downstream
Tssr64897	transcription start site region 64897	1943 bp upstream
Tssr71000	transcription start site region 71000	1844 bp upstream
Tssr71001	transcription start site region 71001	1778 bp upstream
Tssr71002	transcription start site region 71002	1759 bp upstream
Tssr71003	transcription start site region 71003	1731 bp upstream
Tssr71004	transcription start site region 71004	1713 bp upstream
Tssr71005	transcription start site region 71005	1368 bp upstream
Tssr71006	transcription start site region 71006	1335 bp upstream
Tssr71007	transcription start site region 71007	1273 bp upstream
Tssr71008	transcription start site region 71008	1167 bp upstream
Tssr71009	transcription start site region 71009	1105 bp upstream
Tssr71010	transcription start site region 71010	985 bp upstream
Tssr71011	transcription start site region 71011	961 bp upstream
Tssr71012	transcription start site region 71012	931 bp upstream
Tssr71013	transcription start site region 71013	303 bp upstream
Tssr71014	transcription start site region 71014	228 bp downstream
Tssr71015	transcription start site region 71015	353 bp downstream
Tssr71016	transcription start site region 71016	589 bp downstream
Tssr71017	transcription start site region 71017	1038 bp downstream
Tssr71018	transcription start site region 71018	1079 bp downstream