rs46906536 SNP Detail

Summary

• ID
  rs46906536
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:101865613 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        TGAAT CACCAGACAG TGAACAGGGA
  W
  TCAAGTCAGC AGCAGAGGCA GGCAC                                      
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	AKR/J	BALB/cByJ	FVB/NJ	LG/J	MOLF/EiJ	NZW/LacJ	PWD/PhJ	SM/J
ss61446069	NES16829101	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	A		A	A	T
ss323155276	CHEV_9_101890744	CHEVERUD	SCREENING_POP	f	SNP					A				T
SNP Consensus Information
SNP					Consensus Type	A/J	AKR/J	BALB/cByJ	FVB/NJ	LG/J	MOLF/EiJ	NZW/LacJ	PWD/PhJ	SM/J
rs46906536					SNP	T	T	T	A	A	A	A	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss61446069	NES16829101	PERLEGEN	MM_PANEL	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:101865613 () rs orientation: forward

Symbol	Name	Function Class
Ephb1	Eph receptor B1	within coordinates
Gm31326	predicted gene, 31326	846 bp upstream
Gm69124	predicted gene, 69124	747 bp upstream
Rr685661	regulatory region 685661	1165 bp distal
Rr685662	regulatory region 685662	1802 bp proximal
Tssr86718	transcription start site region 86718	779 bp upstream