rs46909067 SNP Detail

Summary

• ID
  rs46909067
• Variation Type
  SNP
• Alleles
  C

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr5:143608061 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        CCAGG ATGCTCTAGA GGGGCAGACA
  C
  GAGGTTCGAG GGAGAGTGCT GCGCT                                      
  
  C = C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	LG/J	SM/J
ss144601677	ENSMUSSNP1680868	ENSEMBL	ENSEMBL_Sanger	f	SNP	C
ss321708420	CHEV_5_144383175	CHEVERUD	SCREENING_POP	f	SNP		C	C
SNP Consensus Information
SNP					Consensus Type	A/J	LG/J	SM/J
rs46909067					SNP	C	C	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr5:143608061 () rs orientation: forward

Symbol	Name	Function Class
Cpgi16995	CpG island 16995	within coordinates
Cyth3	cytohesin 3	141 bp upstream
Gm73103	predicted gene, 73103	659 bp downstream
Rr124733	regulatory region 124733	within coordinates
Tssr49666	transcription start site region 49666	134 bp upstream
Tssr49667	transcription start site region 49667	160 bp upstream
Tssr49668	transcription start site region 49668	249 bp upstream