rs46909237 SNP Detail

Summary

• ID
  rs46909237
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:20210083 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ACTTTTCTAA TGTAGCCTGC
  ACCTTGCAAA CACAATTCTC CCTCCCACCC ACTCGGCCCA AGCACAGCAA TGGTGGATCG
  GCGCTCTGTA AATCTTTTCT CAATAATGAA CGGTGACAAT ATCAACTCAA AGCAGGAAAC
  AGATACTGAA GAATAGGGAA AGACAGCACT GCAATCCTCA ATATAGTCCT CAACTTACAG
  Y
  CGTTGCTGAA CTTCCAATTT CCAACTTCAT ATTAGTTCAA AAGCATTATC CATCATCAGA
  AACCACTTTG AATTTTGATA TTTCATTGGT TAGTGATATG CAATATGGTA TTCTTCCATG
  ATGCCGAACA CCTGCCCCAG TCCCCAGGCA GCAGTGAGAG CATTAAGGTA AACACATAAA
  TGCTACTCTT TTGCTAGGCT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J	MSM/Ms
ss134671668	ENSMUSSNP1354185	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	T	T	C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J	MSM/Ms
rs46909237					SNP	T	T	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:20210083 () rs orientation: forward

Symbol	Name	Function Class
Cpgi13009	CpG island 13009	646 bp distal
Gyg1	glycogenin 1	855 bp upstream
Rr574068	regulatory region 574068	1313 bp distal
Rr574069	regulatory region 574069	250 bp distal
Rr574070	regulatory region 574070	655 bp distal
Tssr841	transcription start site region 841	847 bp upstream
Tssr32710	transcription start site region 32710	797 bp upstream