rs46909406 SNP Detail

Summary

• ID
  rs46909406
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:127431334 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        TTTTGTTTTT TGAGACATAT CTCAACAGCT TGCCCAGGCT
  GCTGTTGCAA TCACTCTCTA GCCCGGTGCT GGGTTTGAAC TTCCCATCCT CCTGTTCCAG
  Y
  CTCTCTCATA GCAGGGTCTG TGAGCCTGTA CTAACAGGTT ACTTCCTGTT CATTGTCACT
  TGGGTTGACT TTTTATTCTT GATTTGGAAG ACTTCGTTG                       
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J
ss147535394	ENSMUSSNP2477601	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	T	C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J
rs46909406					SNP	T	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:127431334 () rs orientation: forward

Symbol	Name	Function Class
Cpgi12227	CpG island 12227	1390 bp distal
Mrps5	mitochondrial ribosomal protein S5	Intron
Rr564565	regulatory region 564565	1304 bp distal
Rr564566	regulatory region 564566	1833 bp distal
Rr564567	regulatory region 564567	821 bp distal
Rr564568	regulatory region 564568	660 bp proximal
Tssr20026	transcription start site region 20026	1984 bp downstream
Tssr20027	transcription start site region 20027	907 bp upstream
Tssr20028	transcription start site region 20028	1328 bp upstream