rs46909641 SNP Detail

Summary

• ID
  rs46909641
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr7:58992096 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CATCTGAGGA CCTCAGGGAA
  GTCACCCAAG AGCCCCCCAA GGAGTCAACG GACGTCTTGT AACCCTGTTG CCCTGGATGG
  GCCTCAGTGT AATCCTATTG ATCATGATTT TAATGTCATC ACCACTCTTC ATGACCTATG
  ATGGCCAATA TTGAAAAGGC ATAGACAGAA AATGGCTAGC TGTATTTTGA TATCACCTAA
  Y
  CTAAACCATC CACTTACCTT CCTTTCCCAA ACTTCCTCAG AGTTAGGAAT GGTTACATGT
  AACTGGAGAG GGATGCAGGC AAGAAAGTTC TTCCAGGGAA GCAAGGGCAC CCTTGTTTGA
  AACTTTGAAG AATATCTTTC CTAAGGAGGA AAGGGAAATC GGTCAAGGCA CTTGTTTGTT
  TTTTAAATAA ATGTCAGACG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss61014307	NES16119674	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	T	C	C	C	C	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs46909641					SNP	C	C	C	C	C	C	T	C	C	C	C	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss61014307	NES16119674	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:58992096 () rs orientation: forward

Symbol	Name	Function Class
Del(7Ube3a-Snrpn)1Alb	Deletion, Chr 7, Beaudet 1	within coordinates
Gm24966	predicted gene, 24966	1725 bp downstream
Gm25499	predicted gene, 25499	54 bp upstream
Snhg14	small nucleolar RNA host gene 14	within coordinates