rs46909914 SNP Detail

Summary

• ID
  rs46909914
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr7:44463625 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        ACTAATCAAC TCACCAACCA ATCAGTGAAC AAGCCAATCA
  ATGATTCAAA TCAATCAGCC AACCACTCAG TGAAGCAGTC ACCCAACTAA CGGTCCACCC
  R
  ACAAAGGTCT GCTCCCACGT CTGTAATCCT GCTCTGTGGC TGCTTGACTG CACCCCATAC
  CTATGTCTTC TCTCCTTTCC TTGCTTGTTC AGTTATTAT                       
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	DBA/2J	LG/J	SM/J
ss149122984	ENSMUSSNP3928895	ENSEMBL	ENSEMBL_Sanger	f	SNP	G	G
ss322199698	CHEV_7_52069571	CHEVERUD	SCREENING_POP	f	SNP			A	G
SNP Consensus Information
SNP					Consensus Type	A/J	DBA/2J	LG/J	SM/J
rs46909914					SNP	G	G	A	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:44463625 () rs orientation: forward

Symbol	Name	Function Class
Atf5	activating transcription factor 5	within coordinates
Cpgi18994	CpG island 18994	1548 bp proximal
Nup62	nucleoporin 62	1887 bp upstream
Rr400297	regulatory region 400297	1571 bp upstream
Rr646219	regulatory region 646219	1447 bp proximal
Tssr66425	transcription start site region 66425	861 bp downstream
Tssr66426	transcription start site region 66426	1728 bp upstream
Tssr72229	transcription start site region 72229	857 bp upstream
Tssr72230	transcription start site region 72230	1418 bp downstream
Tssr72231	transcription start site region 72231	1463 bp downstream
Tssr72232	transcription start site region 72232	1708 bp downstream