rs46911077 SNP Detail

Summary

• ID
  rs46911077
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr8:71064815 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        GTGAC ACTTGGTGAC ACTAGGCATG
  R
  CAGGTGCTCC CCTGTGAGCT TCCAA                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss60632746	NES16282164	PERLEGEN	MM_PANEL2	f	SNP	G		A	G	G	G	G	G	G	G		A	A	G	A		G
ss145127962	ENSMUSSNP4009483	ENSEMBL	ENSEMBL_Sanger	f	SNP		G	A					G
ss322700625	CHEV_8_73136064	CHEVERUD	SCREENING_POP	f	SNP											G					G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs46911077					SNP	G	G	A	G	G	G	G	G	G	G	G	A	A	G	A	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60632746	NES16282164	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr8:71064815 () rs orientation: forward

Symbol	Name	Function Class
Cpgi20476	CpG island 20476	1681 bp distal
Cpgi20477	CpG island 20477	285 bp distal
Gm45546	predicted gene 45546	within coordinates
Gm63790	predicted gene, 63790	1309 bp downstream
Rr400904	regulatory region 400904	1020 bp downstream
Rr400905	regulatory region 400905	within coordinates
Rr664836	regulatory region 664836	1762 bp distal
Rr664837	regulatory region 664837	within coordinates
Rr664838	regulatory region 664838	1215 bp distal
Rr664839	regulatory region 664839	535 bp distal
Rr664840	regulatory region 664840	5 bp distal
Tssr77777	transcription start site region 77777	1753 bp downstream
Tssr77778	transcription start site region 77778	1447 bp downstream