rs46911603 SNP Detail

Summary

• ID
  rs46911603
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr7:84340380 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CAGGATATTC TAAAATAAAT
  CACCAAAGCT AAGCCTGGCC AGCCACCGTG GCCCAGGCCT TTATACTTTC AGCATGGAGA
  GGCAAAGAAA AATATACCTC TGTGAGTACT AGGTCAGCCT GGTGGATATA GCAAGTTCCA
  GGGTGACCAG AGCTAAGTAG TGAAACCCAG GGCCAAATAA AATAAAGCTA AGCCTGCTGT
  K
  CGAAACCAGA GCAGAACAGA AGGTCCCTAC CCAGGGCCTA AGGGTGTTTT TGAGGCACAT
  TCAACCCATT CAAAATTTAT ATTTAAGGTT GGAGTAATGA TTCAGCAGTT AAGAGCACTT
  ACTGCTCTTG TAGTGGTCTT AGGTTGGGTT CCCAGCATCT GCGTGGTGGC TCACAACTGT
  CAAAACACTC ATACACTTGA                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J
ss145209011	ENSMUSSNP2593037	ENSEMBL	ENSEMBL_Sanger	f	SNP	G	T	T
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J
rs46911603					SNP	G	T	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:84340380 () rs orientation: forward

Symbol	Name	Function Class
2610206C17Rik	RIKEN cDNA 2610206C17 gene	within coordinates
Cpgi19383	CpG island 19383	663 bp distal
Rr400423	regulatory region 400423	1057 bp downstream
Rr650632	regulatory region 650632	1418 bp distal
Rr650633	regulatory region 650633	1226 bp distal
Rr650634	regulatory region 650634	725 bp distal
Tssr73444	transcription start site region 73444	1351 bp upstream
Tssr73445	transcription start site region 73445	1338 bp upstream
Tssr73446	transcription start site region 73446	1273 bp upstream
Tssr73447	transcription start site region 73447	1254 bp upstream
Tssr73448	transcription start site region 73448	1233 bp upstream
Tssr73449	transcription start site region 73449	1208 bp upstream
Tssr73450	transcription start site region 73450	1181 bp upstream
Zfand6	zinc finger, AN1-type domain 6	1156 bp upstream