rs46911630 SNP Detail

Summary

• ID
  rs46911630
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr8:107361535 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        CCATACAGTG AGACCCTGTG TAGCCTTAAC TGTCCTGGAA
  CTCTCTGTAG ACCAGGCTGG CCTTGACTCG CAGAGATCCA CCTGTCTTTG CCTCCAGGTG
  Y
  TGGGATTTGT TTGTTTGTTT GTTTTTATTT TGTTTTAAAA CAGGGTCTTT GTATATAGCT
  TTGGCTGTCC TGGAACTCAC TATGAAGACC AGGCATTTG                       
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	LG/J	SM/J
ss145732439	ENSMUSSNP5843562	ENSEMBL	ENSEMBL_Sanger	f	SNP	T
ss322825750	CHEV_8_109158803	CHEVERUD	SCREENING_POP	f	SNP		C	T
SNP Consensus Information
SNP					Consensus Type	A/J	LG/J	SM/J
rs46911630					SNP	T	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr8:107361535 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Cdh1	cadherin 1			Intron
				Noncoding-Transcript-Variant
Rr669236	regulatory region 669236			977 bp distal
Tssr79254	transcription start site region 79254			1386 bp upstream