rs46913175 SNP Detail

Summary

• ID
  rs46913175
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr15:85529347 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        TCACCATTGC CCACTGTGGG CGACTCTGAT TCTTCTGACT
  TTTGGGCATC TTACCCACCA GGCCATTCCT TCTGTAGCTC AGGAGGGTGT CCCCACCATG
  Y
  CTACCCCATA GTCTCTGCTC CCACGGGGTC CCATATATTC CTCATTTGCC TCCGAGTCTT
  AACAGTCCCC TGCAAAGTTA AGTTTATGAC TATGGATAA                       
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J	MSM/Ms
ss148269095	ENSMUSSNP752778	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	C	C	T
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J	MSM/Ms
rs46913175					SNP	T	C	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr15:85529347 () rs orientation: forward

Symbol	Name	Function Class
Cpgi7486	CpG island 7486	829 bp proximal
D130051D11Rik	RIKEN cDNA D130051D11 gene	within coordinates
Gm62280	predicted gene, 62280	within coordinates
Lncppara	long noncoding RNA near Ppara	955 bp upstream
Rr507251	regulatory region 507251	213 bp proximal
Rr507252	regulatory region 507252	584 bp proximal
Rr507253	regulatory region 507253	1305 bp proximal
Tssr132525	transcription start site region 132525	543 bp upstream
Tssr132526	transcription start site region 132526	933 bp upstream