rs46913787 SNP Detail

Summary

• ID
  rs46913787
• Variation Type
  SNP
• Alleles
  G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:25154639 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        ATCAAAGCTG GCTCCTCGAG AAAAAAGGTA AGTGGTAAGG
  AGAGGGCTGC TGGCATGGAG GTCTTCTCCG TAAATCACAG GAGAATGGGG TTGTGTGCTC
  G
  GGCCAGGTCC AGGGCCTCTG TGAACTGTGA CAGCCCCAGG CTGGGGTTGG TCAGCCTACT
  GTTTACTTCA GAGATTTGGG GGAAGTAGTG CAGAGTTCC                       
  
  G = G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	DBA/2J
ss146377539	ENSMUSSNP3107026	ENSEMBL	ENSEMBL_Sanger	f	SNP	G
SNP Consensus Information
SNP					Consensus Type	DBA/2J
rs46913787					SNP	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:25154639 () rs orientation: forward

Symbol	Name	Function Class
Cpgi11304	CpG island 11304	685 bp distal
Rr553041	regulatory region 553041	1999 bp distal
Tprn	taperin	within coordinates
Tssr16681	transcription start site region 16681	1957 bp downstream
Tssr16682	transcription start site region 16682	1417 bp downstream
Tssr16683	transcription start site region 16683	1408 bp downstream
Tssr16684	transcription start site region 16684	1280 bp downstream
Tssr16685	transcription start site region 16685	1259 bp downstream
Tssr16686	transcription start site region 16686	1246 bp downstream
Tssr16687	transcription start site region 16687	696 bp downstream
Tssr16688	transcription start site region 16688	337 bp downstream
Tssr16689	transcription start site region 16689	314 bp downstream
Tssr16690	transcription start site region 16690	930 bp upstream