rs46915094 SNP Detail

Summary

• ID
  rs46915094
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr12:85150745 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ATTATAGCTT CAAGGTTAAG
  AGAAAATTAG ACATTAAAAT ACAACAAAAT CTGGGTGTGG GTGTTTGCAT GTTTAATCCC
  AGCACTCAGA AGGCTGAGTG AAGGACAGTG AGCTTGAGGC TAGCCTGGGC TAACAGTGAG
  ACAGTAAGCT TGAGGCCAGC CTGGGCTAAC AGTGAGAAGC ATCAGCCCTT ATCTCAAAAA
  Y
  ACGCATGAGG GTCGGTGAGA TGGCTCAGTA GGTAAAGGTG CGTGCTACCA AGTCTGATGA
  CCTGAGTTTA TCCCCAGCAT CCACATGATG GAAGGGGAGA ATTAATAAAA CAGAACTCGT
  GAAATAGTGG AAAATGAACA CAGGATTTTG TAGCTAAAAG GTGTAGAACG AAACTGAGGT
  TGAATGTCAA GTAAATGATA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss52449553	NES15419803	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	C	T	T	T	C	T	T	C	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs46915094					SNP	T	T	T	T	T	T	C	T	T	T	C	T	T	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss52449553	NES15419803	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr12:85150745 () rs orientation: forward

Symbol	Name	Function Class
Gm38355	predicted gene, 38355	1624 bp upstream
Prox2	prospero homeobox 2	within coordinates
Rr264587	regulatory region 264587	542 bp distal
Rr269802	regulatory region 269802	1806 bp distal