rs46916490 SNP Detail

Summary

• ID
  rs46916490
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:127685537 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GGAGTTTAGA GACCTGGGTT
  CTCCTCTGCT CTGGTACCCC TTACCTTGTC AGCTTACGTT GCCTGTGAAC TCTTGCCTTA
  CCAAGAGTTC AAATATACAC TTGAGGGAGA AGCTGTTAAA TGGCTTCCTT ACATACATCT
  ATTACTGATC TATTAGTACT ATCCTAAAGG GCCATTATAG TGAATGATAT GGGTTAGTGC
  R
  CTTGTATTCC CTCTATTTCT CTGCCAAACC GTGGTCTGTG GTCATAGCAC TGCACCACGT
  GAGACTCTGG TAAGAGATGT CAAGGGTCAG ACCCTTACTG AAAATTAGCT ACATCAAAAT
  CTTTGTTAGC CAGAGATGAC AGGTCATGCA CGTTAGCTGA GAGTGCTGCC ACAGCCGCCC
  TCCGCCTGGT CTCTCGGTTA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
ss135874358	ENSMUSSNP5352030	ENSEMBL	ENSEMBL_Sanger	f	SNP	G	G	A
ss320957949	CHEV_3_127594806	CHEVERUD	SCREENING_POP	f	SNP				A	G
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
rs46916490					SNP	G	G	A	A	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:127685537 () rs orientation: forward

Symbol	Name	Function Class
Fam241a	family with sequence similarity 241, member A	Intron
Rr584892	regulatory region 584892	1964 bp distal
Rr584893	regulatory region 584893	1567 bp distal
Rr584894	regulatory region 584894	175 bp distal
Rr584895	regulatory region 584895	1452 bp proximal