rs46916799 SNP Detail

Summary

• ID
  rs46916799
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:102283263 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ACATTATAAA AACTGATGCA
  TCTTCCTCCA GACTTTCTTG GATTTAATTT ACCAGCAAAT CTCTTGGAAA CAAACTGAAT
  CTTTCCTTTC CCTTCTTGTA TCCCATATTT CAAACTGGAG ATTCTTAGTC ATAAGATCAG
  AGCCGTGAGG GGTCCTGAGA GCCAGAGCTG GCACTGCCAG GGAACTGTCC CAGGACAGTA
  Y
  GTATGCTAAG CAGGTTCTCT TCTGACTCCT CCCCGAGTCC TACAGCCAGA GTTTAAAATC
  GGTTTCTTTC ACATTGTGTG TGTGTATGTG TGTGTGTGTG TGTGTGTGTT TCCTTTCCCT
  ATATTCCTCT CCTGGGAACA CATGCGAGGT TTCAGCTGGG CTACATCTGC CTGTGCTGTG
  TATATTTATT CTGGAGTTAT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	DBA/2J	LG/J	SM/J
ss147112313	ENSMUSSNP766608	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	C
ss320437751	CHEV_2_102293075	CHEVERUD	SCREENING_POP	f	SNP			T	C
SNP Consensus Information
SNP					Consensus Type	A/J	DBA/2J	LG/J	SM/J
rs46916799					SNP	T	C	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:102283263 () rs orientation: forward

Symbol	Name	Function Class
Cpgi11976	CpG island 11976	638 bp distal
Fjx1	four jointed box 1	1126 bp upstream
Rr561695	regulatory region 561695	1574 bp distal
Rr561696	regulatory region 561696	329 bp distal
Rr561697	regulatory region 561697	525 bp proximal
Rr561698	regulatory region 561698	652 bp proximal
Tssr25397	transcription start site region 25397	1144 bp upstream
Tssr25398	transcription start site region 25398	1103 bp upstream
Tssr25399	transcription start site region 25399	1075 bp upstream