rs46917273 SNP Detail

Summary

• ID
  rs46917273
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr15:100978802 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        CAGCC ACTTGGTTTC CATCACTAAC
  K
  GCATGGAGTA CTGCCACCCA CCCCA                                      
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	DBA/2J	LG/J	SM/J
ss148482191	ENSMUSSNP4404669	ENSEMBL	ENSEMBL_Sanger	f	SNP	G	T
ss325085181	CHEV_15_100911352	CHEVERUD	SCREENING_POP	f	SNP			G	T
SNP Consensus Information
SNP					Consensus Type	A/J	DBA/2J	LG/J	SM/J
rs46917273					SNP	G	T	G	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr15:100978802 () rs orientation: forward

Symbol	Name	Function Class
Cpgi7765	CpG island 7765	1391 bp distal
Gm53912	predicted gene, 53912	within coordinates
Gm62031	predicted gene, 62031	876 bp downstream
Rr509900	regulatory region 509900	1864 bp distal
Rr509901	regulatory region 509901	1813 bp distal
Rr509902	regulatory region 509902	925 bp proximal
Tssr136518	transcription start site region 136518	1989 bp upstream