rs46918588 SNP Detail

Summary

• ID
  rs46918588
• Variation Type
  SNP
• Alleles
  G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  132
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:88192180 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                      T TGGTCTAGGA AAGTCAAGGG GGCTCACGAG GTTGAGGCAG
  CTAGACAAAC AGCTCAAGGC CAAGAGCAAA GGGAGATAGC TGGTGGGAAT ACCCTGCCAG
  G
  GATTCCTGCC ACACCAGGCA GCCAGAGACC CAGTTCAACC AGGGAAATAC AGTTCACAAA
  GTATTTTTAT CCATGGAAAT AAATCAGAAA ACAAAACTAG C                    
  
  G = G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ
ss144899262	ENSMUSSNP6545672	ENSEMBL	ENSEMBL_Sanger	f	SNP	G
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ
rs46918588					SNP	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:88192180 () rs orientation: forward

Symbol	Name	Function Class
Hjurp	Holliday junction recognition protein	within coordinates
Tssr12870	transcription start site region 12870	360 bp downstream