rs46920643 SNP Detail

Summary

• ID
  rs46920643
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr7:126222029 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AAACTCAGAC CTCAGGCCAC
  TCTACACTTG GTTCAACCAT CTTCTCATTT GCTTCACATT TGCCTGGAAT TCTGGTCCTG
  AGACCCATCG GCCCACCATG CTTAGGGAGA GCTTTCTCAC CAGCTCACCA AGCACCCCAT
  CCTGGAAGCC AGCCTGGTAT TTCATGACTG AATTTGAGCC CTCGGTTGCT TAAAACAAAT
  M
  CTCTGCATGT TTTAAATCAT GGATGCTGGG GTTTTTTTTT TTTTTTTCAT TTTGCAAATG
  GTATTAACAG AAACATTCTC TTCCAAAAGC AGCTCTATAT AATAGGACCT CATGGTGCTC
  AAGAATATGT AGGGGACTGG CCACAGGTTG TCTCTGGGAC AGCACTGCAA AGAAACAAAG
  CAACTTCCCT GGAAGAAACC                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	DBA/2J	MSM/Ms
ss145875133	ENSMUSSNP2838083	ENSEMBL	ENSEMBL_Sanger	f	SNP	A	C	C
SNP Consensus Information
SNP					Consensus Type	A/J	DBA/2J	MSM/Ms
rs46920643					SNP	A	C	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:126222029 () rs orientation: forward

Symbol	Name	Function Class
Gm39087	predicted gene, 39087	within coordinates
Nupr1	nuclear protein transcription regulator 1	389 bp downstream
Rr655536	regulatory region 655536	1147 bp distal
Rr655537	regulatory region 655537	596 bp distal
Rr655538	regulatory region 655538	449 bp distal
Tssr69045	transcription start site region 69045	47 bp upstream
Tssr69046	transcription start site region 69046	388 bp upstream
Tssr69047	transcription start site region 69047	590 bp upstream