rs46920920 SNP Detail

Summary

• ID
  rs46920920
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:72893891 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GTTTGTTTGT TTTTGTTTTT
  TGAGGTAGGG TTTCTCTGTG TATCTCCACC TATCCTAAAA CTTGCACTGT AGTCCAAGCT
  GACCTCCAAC TCAGAAATCC GTTTGCCTCT GCCTTCTGAG TCCACCGACT AACTTTAAGA
  TCCCAATCTT AATAGGTCTT AGATTTCTCA GGGGATATTT ATCATGTATA ACTGGTGTGA
  R
  TAGTTTGCTA TTCTGACAAG CTCAAGTCAC AGGGGAACTG AGAAGGTTGT TAAGGGTGAG
  TTAATGCTTT TGGCTTTTTT TTCTTGCTGT GTATCTCTGG CTGTCCTGAT ACTAATATAT
  CCCAGGCTAG ACCTGGGAGT TCTCTTGCCT AAGCGTCCTA GGCACTGTGA TCGTAGTTGG
  GTACCATGGA GCCTGCTGTA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss61420822	NES16804878	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	A	G	G	G	A	G	G	A	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs46920920					SNP	G	G	G	G	G	G	A	G	G	G	A	G	G	A	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss61420822	NES16804878	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:72893891 () rs orientation: forward

Symbol	Name	Function Class
Ccpg1	cell cycle progression 1	within coordinates
Cpgi22024	CpG island 22024	432 bp distal
Gm44503	predicted readthrough transcript (NMD candidate), 44503	within coordinates
Pierce2	piercer of microtubule wall 2	1233 bp upstream
Rr401512	regulatory region 401512	987 bp downstream
Rr682884	regulatory region 682884	1251 bp distal
Rr682885	regulatory region 682885	994 bp distal
Rr682886	regulatory region 682886	325 bp distal
Rr682887	regulatory region 682887	808 bp distal
Tssr2935	transcription start site region 2935	1294 bp upstream
Tssr86066	transcription start site region 86066	1203 bp downstream
Tssr86067	transcription start site region 86067	1185 bp downstream
Tssr86068	transcription start site region 86068	1042 bp downstream
Tssr86069	transcription start site region 86069	967 bp downstream
Tssr90501	transcription start site region 90501	1312 bp upstream
Tssr90502	transcription start site region 90502	1267 bp upstream
Tssr90503	transcription start site region 90503	1212 bp upstream