rs46920965 SNP Detail

Summary

• ID
  rs46920965
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr14:55165988 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        GGTTTGGCCA CATTCAAAGA GTAGCAAAGA AGGAAGTCTT
  CCCAGCAGGG TTCATCTATC TTTTCCCTTC CTTGTCCCAC CCACATGCTC CTCCCTCCTC
  Y
  TCCTCCTCCT CCTCCTCCTC CTCGCATCCC AGTCCCCTCT TCACCCCTAG TTTTCCATTC
  ACGTTATCCT GTTGCTTCTG AAATGTGTCA GAGCCTCCA                       
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	DBA/2J	LG/J	SM/J
ss139573238	ENSMUSSNP4050030	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	T
ss324640900	CHEV_14_55547368	CHEVERUD	SCREENING_POP	f	SNP			T	C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	DBA/2J	LG/J	SM/J
rs46920965					SNP	T	T	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr14:55165988 () rs orientation: forward

Symbol	Name	Function Class
Cpgi6479	CpG island 6479	1463 bp distal
Gm62292	predicted gene, 62292	1771 bp upstream
Rr389680	regulatory region 389680	530 bp upstream
Rr492367	regulatory region 492367	1915 bp distal
Rr492368	regulatory region 492368	1281 bp distal
Rr492369	regulatory region 492369	1989 bp proximal
Tssr128672	transcription start site region 128672	1959 bp upstream
Tssr128673	transcription start site region 128673	1925 bp upstream
Tssr128674	transcription start site region 128674	1761 bp upstream
Tssr128675	transcription start site region 128675	1726 bp upstream
Tssr128676	transcription start site region 128676	1503 bp upstream