rs46922877 SNP Detail

Summary

• ID
  rs46922877
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:144483063 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTCCTCCCCC TCCTCCTCCT
  TCTTCTCCTC CTCCTTCTCC TCTTCTCCTT CACAGAGGTG AATAGAAAGA TCTTTTGTTC
  TTATTTAGCT ATCAATGGAA TGGCATCAGG TTGAATTGAG GAAATTCTCT TTGATATAAT
  CTTGATAGCA GTAAAACCCA GCAGTGCTTA CTGTAAATGA AGACTGGAGA GGCATCCCAG
  S
  CTACCTATTT GCCCATTGAA CTCTTACCTT TTAAAAGCTG AACTTTTCCC TATTGTATAC
  AATAACAATT CTGTAAATGA TAATTTTGCA ACTAATGCTT GTGCAAATGT TCTCTAGACA
  AATAAATAAA GATTTTTCCT TTAGCATCAT GATGGAAATT TTAAGGAATG TTAGTCAAGG
  GTTGATGATC AGAATCTTAC                                            
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss60813232	NES16484932	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	G	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs46922877					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	G	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60813232	NES16484932	PERLEGEN	MM_PANEL	f	SNP	C/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:144483063 () rs orientation: forward

Symbol	Name	Function Class
Gm56327	predicted gene, 56327	1679 bp downstream
Tssr14112	transcription start site region 14112	1781 bp downstream