rs46923756 SNP Detail

Summary

• ID
  rs46923756
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:122521192 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        AATAGAAGGA AGGACTCTTT TTATTGGATA TTTTCTTTAT
  TTGCATTTCA AATATTGTCA CCCCCTGCCC CCGAAGCCCC CTATCCCATT CCCCCTCCTC
  Y
  TGCATCTATG AGGCTGTTCC CCAACCCACC CACTTCTGCC TACTCGCCCT AGCCTACAGG
  ACCAAGGGCC TCCTCTTCTT CCGTTGATGT CCGACAAGG                       
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	DBA/2J	LG/J	SM/J
ss135748489	ENSMUSSNP2099737	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	T
ss320914157	CHEV_3_122430461	CHEVERUD	SCREENING_POP	f	SNP			C	T
SNP Consensus Information
SNP					Consensus Type	A/J	DBA/2J	LG/J	SM/J
rs46923756					SNP	C	T	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:122521192 () rs orientation: forward

Symbol	Name	Function Class
Cpgi13771	CpG island 13771	1249 bp proximal
Pde5a	phosphodiesterase 5A, cGMP-specific	1630 bp upstream
Tssr31509	transcription start site region 31509	1401 bp upstream
Tssr31510	transcription start site region 31510	1461 bp upstream
Tssr31511	transcription start site region 31511	1576 bp upstream
Tssr31512	transcription start site region 31512	1620 bp upstream
Tssr31513	transcription start site region 31513	1655 bp upstream