rs46925225 SNP Detail

Summary

• ID
  rs46925225
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:162397958 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        CATCG GATCTGAACG TCACAACCCC
  K
  GGGGATTCTC CCGGGTTCAA GAAAG                                      
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	DBA/2J
ss145939912	ENSMUSSNP1545104	ENSEMBL	ENSEMBL_Sanger	f	SNP	G	T
SNP Consensus Information
SNP					Consensus Type	A/J	DBA/2J
rs46925225					SNP	G	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:162397958 () rs orientation: forward

Symbol	Name	Function Class
Cpgi932	CpG island 932	within coordinates
Rr396472	regulatory region 396472	15 bp upstream
Rr396473	regulatory region 396473	753 bp upstream
Rr421988	regulatory region 421988	within coordinates
Rr421989	regulatory region 421989	127 bp proximal
Rr421990	regulatory region 421990	205 bp proximal
Rr421991	regulatory region 421991	848 bp proximal
Tssr9715	transcription start site region 9715	208 bp upstream
Tssr9716	transcription start site region 9716	278 bp upstream
Tssr9717	transcription start site region 9717	298 bp upstream
Tssr9718	transcription start site region 9718	1239 bp upstream
Tssr14622	transcription start site region 14622	67 bp upstream
Tssr14623	transcription start site region 14623	960 bp downstream
Tssr14624	transcription start site region 14624	979 bp downstream
Tssr14625	transcription start site region 14625	1006 bp downstream
Tssr14626	transcription start site region 14626	1044 bp downstream
Tssr14627	transcription start site region 14627	1084 bp downstream
Tssr14628	transcription start site region 14628	1105 bp downstream
Tssr14629	transcription start site region 14629	1150 bp downstream
Vamp4	vesicle-associated membrane protein 4	126 bp upstream