rs46925793 SNP Detail

Summary

• ID
  rs46925793
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr8:89362851 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        CAGTA CATCATACAG GCCACGTGGG
  W
  CAAGGCCACC AACAGGAGGA CAGTT                                      
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	LG/J	SM/J
ss145481207	ENSMUSSNP2804578	ENSEMBL	ENSEMBL_Sanger	f	SNP	T
ss322766260	CHEV_8_91160122	CHEVERUD	SCREENING_POP	f	SNP		A	A
SNP Consensus Information
SNP					Consensus Type	A/J	LG/J	SM/J
rs46925793					SNP	T	A	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr8:89362851 () rs orientation: forward

Symbol	Name	Function Class
Rr187078	regulatory region 187078	within coordinates
Rr382438	regulatory region 382438	within coordinates
Snx20	sorting nexin 20	95 bp upstream
Tssr82357	transcription start site region 82357	236 bp upstream
Tssr82358	transcription start site region 82358	107 bp upstream
Tssr82359	transcription start site region 82359	91 bp upstream
Tssr82360	transcription start site region 82360	60 bp upstream