rs46926241 SNP Detail

Summary

• ID
  rs46926241
• Variation Type
  SNP
• Alleles
  C

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  132
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr7:65019296 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                      A CCCTTCAGTT CCCAGCTAAG GACGCAAATA TTTAACTACA
  GAGGTGCCCC TATGTGCCAT AAGATCTCAA TACCATAATT TATGTGTAAA AGCACACCTT
  C
  TAAATCACCT TGCCACAGCA AGCTATTGGA AACACTTCTC TTGGAATAAC ACTTTCCAAG
  TGTGTTGTCT TGACTAACAA GTACCAGAGC TCACACTCTG A                    
  
  C = C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J
ss144901064	ENSMUSSNP4043243	ENSEMBL	ENSEMBL_Sanger	f	SNP	C
SNP Consensus Information
SNP					Consensus Type	A/J
rs46926241					SNP	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:65019296 () rs orientation: forward

Symbol	Name	Function Class
Cpgi19209	CpG island 19209	815 bp proximal
Gm57226	predicted gene, 57226	1755 bp upstream
Rr647944	regulatory region 647944	74 bp distal
Rr647945	regulatory region 647945	775 bp proximal
Rr647946	regulatory region 647946	1457 bp proximal
Rr647947	regulatory region 647947	1766 bp proximal
Tjp1	tight junction protein 1	Intron
Tssr67032	transcription start site region 67032	1874 bp upstream
Tssr72804	transcription start site region 72804	1326 bp downstream
Tssr72805	transcription start site region 72805	1341 bp downstream
Tssr72806	transcription start site region 72806	1360 bp downstream
Tssr72807	transcription start site region 72807	1662 bp downstream