rs46928418 SNP Detail

Summary

• ID
  rs46928418
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  127
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:31079926 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        TCCTGCATGC GCCACCTGCT TGTGCTGACA GCTCCACTGC
  CACACTAAAG AGTCTGTCTT CCTGATGGCG CAGACACCGC TTTGCCTTCT GATACTTACC
  Y
  GTGCTGAACG ATGAATGCAA TACAAGCGCC AGGTAAAGAA ACGTGGATTT TAAAGCCATG
  GCTTTATACT GAGTTACCTT TAACATCGTG AACAATCTCC                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss61369636	NES16746008	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	C	C	C	C	T	C	T	T	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs46928418					SNP	C	C	C	C	C	C	C	C	C	C	T	C	T	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss61369636	NES16746008	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:31079926 () rs orientation: forward

Symbol	Name	Function Class
Aplp2	amyloid beta precursor-like protein 2	within coordinates
Rr675959	regulatory region 675959	within coordinates
Tssr88634	transcription start site region 88634	972 bp upstream
Tssr88635	transcription start site region 88635	926 bp upstream
Tssr88636	transcription start site region 88636	130 bp downstream
Tssr88637	transcription start site region 88637	180 bp downstream
Tssr88638	transcription start site region 88638	245 bp downstream
Tssr88639	transcription start site region 88639	1890 bp downstream
Tssr88640	transcription start site region 88640	1901 bp downstream
Tssr88641	transcription start site region 88641	1913 bp downstream
Tssr88642	transcription start site region 88642	1938 bp downstream
Tssr88643	transcription start site region 88643	1977 bp downstream