rs46928699 SNP Detail

Summary

• ID
  rs46928699
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  132
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr11:88862794 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                      G CCAGCCTGGT CTACAAAGTG AGTTCCAGGA CAGCCAGGGC
  TACACAGAGA AACCCTGTCT TGAAAAAACA AAACAAAACA ACAACAAACA ACAACAACAA
  M
  AACAAAGATT TAGAAAGGCA GCTTGAATTT GATGATCACA TTTTGATGCT ATGTCATTTA
  GCAGCTTTTT AATGCTTGAG ATGAGGTTGA AGAACCAAGA A                    
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J
ss132548840	ENSMUSSNP7024317	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	C	A
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J
rs46928699					SNP	C	C	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:88862794 () rs orientation: forward

Symbol	Name	Function Class
2210409E12Rik	RIKEN cDNA 2210409E12 gene	689 bp upstream
Coil	coilin	1967 bp upstream
Cpgi3523	CpG island 3523	1778 bp proximal
Gm10367	predicted gene 10367	408 bp downstream
Rr237596	regulatory region 237596	394 bp distal
Rr247482	regulatory region 247482	1406 bp proximal
Rr402857	regulatory region 402857	1620 bp downstream
Tssr104058	transcription start site region 104058	1705 bp downstream
Tssr104059	transcription start site region 104059	1951 bp upstream
Tssr104060	transcription start site region 104060	1960 bp upstream