rs46929960 SNP Detail

Summary

• ID
  rs46929960
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr7:30254785 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        TGCTAGGCCA ATGAACAAGA ACCCTTGAGT TCCTCTGTCC
  TGGCTGCCCA TCTGCAGCCA GATGTCTTAG GGAGCCTCCT TCACATCTGC CATTCTCTAA
  R
  GTCACACCTT CACTGCCAAC ATTTCCCATC TCCGCAGGCC TTCCTACCAT CAGTCCCCAA
  TAAATGCACT TGAGATTTGT CAACTGCCTT ATGTCTGGG                       
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss60990781	NES16136670	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	A	A	G	G		A	G	A	G		G
ss148682392	ENSMUSSNP3640946	ENSEMBL	ENSEMBL_Sanger	f	SNP		G					A
ss322135236	CHEV_7_31340379	CHEVERUD	SCREENING_POP	f	SNP										G					A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs46929960					SNP	G	G	G	G	G	A	A	G	G	G	A	G	A	G	A	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60990781	NES16136670	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:30254785 () rs orientation: forward

Symbol	Name	Function Class
Cpgi18809	CpG island 18809	1826 bp distal
Cpgi18810	CpG island 18810	763 bp distal
Hspb6	heat shock protein, alpha-crystallin-related, B6	within coordinates
Lin37	lin-37 DREAM MuvB core complex component	81 bp downstream
Tssr65782	transcription start site region 65782	566 bp downstream
Tssr65783	transcription start site region 65783	500 bp downstream
Tssr65784	transcription start site region 65784	476 bp downstream
Tssr65785	transcription start site region 65785	421 bp downstream
Tssr65786	transcription start site region 65786	408 bp downstream
Tssr65787	transcription start site region 65787	313 bp downstream
Tssr71789	transcription start site region 71789	672 bp upstream
Tssr71790	transcription start site region 71790	530 bp upstream