rs46930027 SNP Detail

Summary

• ID
  rs46930027
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr15:73357920 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CCGGGTCTAC AAAGTGAGTT
  CTAGGACAGG CAGGGCTGTT ACACCACAGA GAAAACCTGT CTAAGAAGGG AAGGGGAGGG
  GGAGGGGGAG GGGGAGGGGG AGGGGGAGGG GGAGGGGGAG GGGAGGGAAG GGAAGGGAAG
  GGAGACACTC CTCCCTGCCT GTCCCCTCCT TTGCTGGCTG AAGGGTCAGT CTGCTGCTGC
  M
  TCTGCCATCT CTCTGCCATC CTCCATGACC TGAATCAAAC TCCAGCTGCT TTTTAAACCT
  TCTAACAGGG ACTGGAAGAC CAGCAACTCT ATCGGAATAG TCTAGACCGG CAGTGCTACA
  TTGGTACTTC TGAGGCATCT GGGTTTGTGG ACTGAATAGC TGTTGGTTTT CTGTTCTCTC
  CAGGGTGCAG TAGCAATTGC                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J
ss148110573	ENSMUSSNP1256839	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	A
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J
rs46930027					SNP	C	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr15:73357920 () rs orientation: forward

Symbol	Name	Function Class
Gm63120	predicted gene, 63120	within coordinates
Rr504083	regulatory region 504083	146 bp proximal
Tssr4621	transcription start site region 4621	1751 bp upstream
Tssr4622	transcription start site region 4622	1813 bp upstream
Tssr131529	transcription start site region 131529	1763 bp upstream
Tssr134702	transcription start site region 134702	1197 bp downstream
Tssr134703	transcription start site region 134703	1237 bp downstream
Tssr134704	transcription start site region 134704	1252 bp downstream
Tssr134705	transcription start site region 134705	1264 bp downstream