rs46931041 SNP Detail

Summary

• ID
  rs46931041
• Variation Type
  SNP
• Alleles
  G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr10:105358809 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TAGAGCCGCT AACAATCGTT
  TGCTGATTTC CTCTGTAGCA CTGAGTAATT TCGCAAAATC ATAAAATTAA AAAGGAAAAG
  ACAAGCATAA AACATTGCTC CTCTGACAGC GCTCTTGAGA GAAAAAACAC ATAGGTAACT
  ATTATATTTG AGACCCCGTA TAATTGACTA GACATTAAAA TAAGTCCAAT CCGAGTCCAC
  G
  AGGAGGAAGT GCAAACTGAA ATGCAAATTA CAAAAGCACG TGACAAGGGT TAGCTAGCAG
  ATTCCTAGCA GGGTCTTAGT GCCTCACCCA CCAGAGCCGC AACAAGATGC AGTCCTGGAG
  CCTGGAAGTC ACTTCCTGGG GTCTCTAACC TGAGACCTGC TAGGCAGATG CGTAGCAGCA
  AACACACTAG CTGTCTGAGA                                            
  
  G = G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	DBA/2J
ss147504694	ENSMUSSNP2374844	ENSEMBL	ENSEMBL_Sanger	f	SNP	G	G
SNP Consensus Information
SNP					Consensus Type	A/J	DBA/2J
rs46931041					SNP	G	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr10:105358809 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
4930588G05Rik	RIKEN cDNA 4930588G05 gene			1092 bp downstream
Rr438483	regulatory region 438483			1956 bp distal
Rr438484	regulatory region 438484			160 bp distal
Rr438485	regulatory region 438485			within coordinates
Tmtc2	transmembrane and tetratricopeptide repeat containing 2			Intron
				Noncoding-Transcript-Variant
Tssr99169	transcription start site region 99169			1153 bp upstream
Tssr99170	transcription start site region 99170			931 bp upstream