rs46932460 SNP Detail

Summary

• ID
  rs46932460
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:44478627 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGAAAGACCC CATCCTAATT
  AATTAATTAA AAAGTTGAAG GAAGGGAAAT TCTCTGAATA TTTAGTGTGT TAAAGTTATA
  CTTTTGCTTT TGTTCTTCTG GTGACAAGCG CGTGCCAGGC CATAATTGTA TTGCGACTTC
  TCTTGTATTT GTTTAAAATT GTTTATGGTA ACGATTCTTT CTTTTTCTAT TTCTTCTTAG
  W
  TCCTCACATA TCTGGGTAAA AGTCCCTACA AGGGAAAATA CAGATGTTTA CACCCTTACC
  CAAATTCCTT CAGGGACATG GGGACCCAGG CTGGGATGCC ATTCAGTAGT AGGCCACCTG
  TCTGGCGGGC ACAGGCTCTG GGTTCCTTTC CCAGTGCAAC AAAGCCAGCC TAGCTGGGTG
  ACATTCCCCT TATGAGCCTA                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J
ss136397314	ENSMUSSNP2894682	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	A
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J
rs46932460					SNP	T	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:44478627 () rs orientation: forward

Symbol	Name	Function Class
Rr195037	regulatory region 195037	1827 bp distal
Rr206319	regulatory region 206319	1426 bp distal
Tssr2844	transcription start site region 2844	455 bp downstream
Tssr89174	transcription start site region 89174	384 bp downstream
Tssr89175	transcription start site region 89175	433 bp downstream
Tssr89176	transcription start site region 89176	779 bp downstream