rs46933099 SNP Detail

Summary

• ID
  rs46933099
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:45175521 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GAGGGAGGGA AGGAGGGAGA
  GAGAGAGGGA GAGAGAGAGA GAGAGAGAGA GAGAGAGAGA GAGAGAGAGA GAGAGATTTC
  ACTACCTTGT TTTCTCCTAG GGTAATTATC ATCATCATCA TTAAACTTAG GATAGTTCTA
  AGCAGAATGG GGGGCAGTTT CTCCCATGAT TTGTGTGAAG GTGGATGGTC TACACAGAAG
  Y
  TCTAGGCCCA GTGCAGGCAC CATCAACCCT AAGCATGGTT CTCTGGATTT TTCTGGATGG
  TTTGAGCACC CTCTGCCTGG ACTGCAGCCT GGGTCACTCA CACTGCTCCG TCGTGATAAG
  TAAACACTGC TCCTCCGACC ACTCTGCCTT GTTAATTCGG GATTCCAAGC GGGGCAGCAC
  CTTGACACAA AACTTTCTCA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	LG/J	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J
ss61388321	NES16764933	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	C		C	T	T
ss322942720	CHEV_9_45072306	CHEVERUD	SCREENING_POP	f	SNP								T				C
SNP Consensus Information
SNP					Consensus Type	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	LG/J	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J
rs46933099					SNP	C	C	C	C	C	C	C	T	C	T	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss61388321	NES16764933	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:45175521 () rs orientation: forward

Symbol	Name	Function Class
Il10ra	interleukin 10 receptor, alpha	within coordinates
Tssr84758	transcription start site region 84758	659 bp upstream
Tssr89253	transcription start site region 89253	1284 bp upstream
Tssr89254	transcription start site region 89254	1215 bp upstream
Tssr89255	transcription start site region 89255	1155 bp upstream
Tssr89256	transcription start site region 89256	1124 bp upstream
Tssr89257	transcription start site region 89257	33 bp upstream
Tssr89258	transcription start site region 89258	within coordinates
Tssr89259	transcription start site region 89259	17 bp downstream