rs46933341 SNP Detail

Summary

• ID
  rs46933341
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr17:31093578 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CCTTGCTGTA CCACCCCAGG
  CCTCTGGGGG CGCTCTACTC TCATTTCATC ACGTGGAGGA GGTGGGGTGG AGCCTAGGGT
  TGCCTAGATT GACTCAGCGC AAGGTGCCAT TGACAACAGC GCCAAGTCGT AGGCTTGCAA
  CAGCTCAAAC TGGATTTACA ACTCCCCGCA GAGGTGACTT GGCCTTCCTG TTTCCCAGGT
  Y
  GACCACTCCA CGTTCCAATA ACTCGCAGCA GGGCACTCCC GAGGTGCAGT TAGATTCACT
  GTGTCCCCTG GGAAACAAGG CCAAATGTTT CCGTGAATGC GATTGCCCCC CCTGGCGTTT
  TCTTATCAGC TAGCACCTTA AGACTGGCTT GTGTTTTCTT TCCGAACTGA CAGCCCTCAT
  TACATAAGGG ATGCCTAGTT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	LG/J	PWD/PhJ	SM/J	WSB/EiJ
ss60563343	NES16495492	PERLEGEN	MM_PANEL2	f	SNP	C		T	T	C	T	T			C		T
ss145451161	ENSMUSSNP6891326	ENSEMBL	ENSEMBL_Sanger	f	SNP		C						C
ss325357668	CHEV_17_31011549	CHEVERUD	SCREENING_POP	f	SNP									C		T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	LG/J	PWD/PhJ	SM/J	WSB/EiJ
rs46933341					SNP	C	C	T	T	C	T	T	C	C	C	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60563343	NES16495492	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr17:31093578 () rs orientation: forward

Symbol	Name	Function Class
Cpgi8937	CpG island 8937	within coordinates
Dnah8	dynein, axonemal, heavy chain 8	within coordinates
Gm9937	predicted gene 9937	within coordinates
Gm50252	predicted gene, 50252	within coordinates
Rr330583	regulatory region 330583	within coordinates
Rr341200	regulatory region 341200	within coordinates
Tssr147267	transcription start site region 147267	427 bp downstream